Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2567991 chr12:121610489 A/G 1.87E-5 119 46.6 46.07 24.87 KM Plot
THYM rs2567997 chr12:121617272 C/T 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs2567999 chr12:121619521 A/G 3.14E-5 116 44.67 46.07 24.87 KM Plot
THYM rs2568001 chr12:121619974 A/C 3.55E-5 116 44.67 46.27 23.9 KM Plot
THYM rs2568002 chr12:121621737 A/G 3.55E-5 116 44.67 46.27 23.9 KM Plot
THYM rs2568003 chr12:121621817 A/G 1.01E-6 117 46.6 41.77 25.83 KM Plot
THYM rs2568483 chr15:78752343 A/G 3.34E-5 119 42.82 42.47 26 KM Plot
THYM rs2568485 chr15:78752114 C/T 3.34E-5 119 26 42.47 42.82 KM Plot
THYM rs2594731 chr3:118963980 C/T 6.75E-13 118 3.83 31.28 46.07 KM Plot
THYM rs2602778 chr2:30879117 G/A 5.58E-5 114 31.07 54.97 35.13 KM Plot
THYM rs2610997 chr4:180487306 A/C 0 119 4.13 47.52 38.58 KM Plot
THYM rs2656069 chr15:78745707 C/T 3.34E-5 119 26 42.47 42.82 KM Plot
THYM rs2656071 chr15:78745343 A/T 3.34E-5 119 26 42.47 42.82 KM Plot
THYM rs2656072 chr15:78744292 A/G 3.34E-5 119 26 42.47 42.82 KM Plot
THYM rs2656073 chr15:78742276 G/T 3.32E-5 119 42.73 46.6 26 KM Plot